Imaging & BioInformatics Student Members (2004 - 2012)

All students that have actively contributed to the scientific work in our group are listed here.

Student Members Computer Science (including mastertrack BioInformatics) Masters
Name
Curriculum
Subject
Mehmet Kovacioglu
grad. nov. 2006.
Masters Thesis
Finding and modelling edge information in 2D slices of 3D images (appl. embryos)
Simon de Haan
grad. sep. 2004
PolyTech.
Optimising protocol for Fluorescent ISH and ISH imaging.
With Insitute for Biology Leiden (IBL)
Wouter Meuleman
grad. sep. 2005
Masters Thesis MicroArray Gene Expression Mining and Linking
Yun Bei
grad. jul. 2005
Masters Thesis Virtual Communities using the Image Database for eXchange
Jinshuo Liu
grad. sep. 2005
Masters Thesis Classification of yeast cells from images
Sander v d Maar
grad. sep. 2007
Masters Project User Interface TV/Video Programming
Tian Feng
grad. jun. 2006
Masters Thesis MicroArray image segmentation
Zan Li
grad. jun. 2007
Masters Thesis MicroArray image background correction
Jan Willem Klinkenberg
grad. aug. 2007
Project
3D tiling for CLSM
Yin Zhou
grad. aug. 2006
Masters CMS and workflow of educational resources in BioInformatics
ICT & Business Masters
Laura Bertens
grad. may 2007
Project

Masters
In Situ hybridisation of innate immune systemin Zebrafish;
With Insitute for Biology Leiden (IBL)
Image processing and classification of Yeast.
With Centraal Bureau Schimmelcultures(CBS), Utrecht
Yini Bao
grad. aug. 2007
Masters Project
AJAX interfaces for LSIDx
Dorieke Schipper
grad. sep. 2006
Masters 3D position and orientation estimation
Willemijn Spoor
grad. may 2007
Masters Project Zebrafish atlas & Gene Expression
With Insitute for Biology Leiden (IBL)
Alexander Nezhinsky
grad. oct. 2007
Masters Project Visualisation of Ontology
Marjolein Braak
grad. sep. 2007
Masters Thesis Surface Triangulation optimization
Aimy Sels
grad. dec. 2007
Masters Thesis Zebrafish atlas & Gene Expression
With Insitute for Biology Leiden (IBL)
Xuan Wang
grad. 2009
Software Project Content Management System
Julio Pieroncielly
grad. mar. 2009
Masters Project Heterogeneous analysis of inate immune system in zebrafish
Elaisa van Leeuwen
compl. oct. 2007
Bachelor
Project
3D reconstruction bile duct system.
Qurratulain Mubarak
grad. jun. 2008
Masters Thesis Modelling Biology with Paradigm
Eric Fadeev
grad. jun. 2009
Masters Project Query optimazation for spatio-temporal models
Zi Di
grad. jun. 2009
Masters Thesis Computation of axis 3D model
Kuan Yan
grad. june 2008
Masters Thesis Time resolved microscopy analysis
Bo Sobolewska
switch to ICT&B
Masters Project Webservices for BioInformatics
Taco Buijtenhuis
Compl.
Research Project Parallelization with REO, applied to image analysis.
Thijs Vermeulen Bachelor Project Image optimizationm feature extraction and classification in Neurobiology: "Dendritic Spines under Stress".
Jelle Oosterhof Bachelor Project Image optimizationm feature extraction and classification in Neurobiology: "Dendritic Spines under Stress".
Frank van Gemeren
Compl. Dec. 2009
Bachelor Project CMS Development kit
Taco Buijtenhuis Masters Thesis Evolutionary Algorithms in Image Processing
Arjen Assink
grad. sep. 2010
Project Study iPhone-Web App
Tim van Meurs
grad. sep. 2010
Project Study iPhone-Web App
Arjen Assink
grad. sep. 2010
Thesis Project Social Media in HRM
Mathijs Vlasveld
grad. sep. 2010
Thesis Project Web 2.0 in Communication Mananagement
Irene Martorelli
grad. may 2012
Erasmus Exchange Expert system for developmental timing in Zebrafish
Patric Stout Research Project Ontology Visualization
Willem Davids
compl. aug. 2011
Bachelor Project CSLM Imaging of Granulomas in Zebrafish
With Insitute for Biology Leiden (IBL)
Jonathan Neuteboom
compl. aug. 2011
Bachelor Project Genome Analysis of Snails
With Insitute for Biology Leiden (IBL)
Derk Geene
compl. july 2012
Research Project Active Shape Models in CLSM
GertJan den Heijer
compl. jun 2012
Research Project Texture analysis of Granulomas.
Derk Geene Master Thesis Active Shape Models for High-Throughput

 

Student Members Media & Technology Masters
Name
Subject
Graduation
Maaike de Jong
Interactive conflict coach
may 2006
Anwar Sardha Innovative visualization of ontologies.
Danielle Loppe Interactive coaching children with food allergy.
mar. 2008
Abel Matahelumual Interactive coaching children with food allergy.
mar. 2008
Rewin Doekhi
Visualisation & Virtualisation EM tomograms
sep. 2010
Remco Waal
AgressieVR, awareness tool for hospital personel
mar. 2007
Xander Witteveen
Obedience
sep. 2007
Roy Bijster
Obedience
sep. 2007
Yiwei Jiang
Analyzing origin of Chinese Characters
mar. 2007
Nick in het Veld RSI in Gaming
sep. 2008
Bob Cruijsberg
Visualization social networks.
sep. 2007
Loren Roosendaal Virtual joy & game
mar. 2008
Christina Papakonstantinou Tag Searching and Semantics
sep. 2008
Giannis Panagiotou Tag Searching and Semantics
sep. 2008
Sjoerd van Kranendonk Gestures in music interaction
sep. 2009
Job de Reus Leading the blind on the web
sep. 2009
Tiago Borges Coelho Unintended Computation
sep. 2010
Stelios Giannoulis The Happiness Cube
mar. 2010
Maarten Melenhorst 3D manipulation device
mar. 2011
Maarten van der Mark Desktop Virtualization
mar. 2011
Frank de Boer A Virtual Window
mar. 2011
Stijn Belle Computer Handwriting
Azita Amani Virtual Museums
Peter Curet Tangible Visualization
Vincent Vijn
Alwin Zwets
Berber de Vries